Publinestorage.blob.core.windows.net



Supplementary Table 5. Differentially expressed genes between Arid1a mutant and WT HCC samples (TCGA database, Firehose).GeneCytobandμ in altered groupμ in unaltered groupσ in altered groupσ in unaltered groupLog ratiopqHigher expression inMYC8q24.2111.089.681.251.621.49.28E-081.33E-04Altered groupGPX214q23.313.7611.831.852.871.945.18E-074.13E-04Altered groupRAB1514q23.39.779.040.710.725.72E-074.25E-04Altered groupSERPINA114q32.1319.5118.660.821.410.851.05E-066.92E-04Altered groupSLC35D29q22.3210.910.420.560.670.481.07E-053.47E-03Altered groupMRPL442q36.110.049.770.320.440.271.81E-055.18E-03Altered groupPABPC18q22.314.9514.280.80.930.672.06E-055.60E-03Altered groupAKR1C110p15.114.7813.61.431.881.182.97E-057.28E-03Altered groupNIFK2q14.39.729.370.430.560.353.48E-058.22E-03Altered groupANP32B9q22.3311.611.20.490.630.43.97E-058.92E-03Altered groupSLC7A919q13.119.258.410.981.810.833.98E-058.92E-03Altered groupTIMM914q23.19.399.040.450.560.356.53E-050.0118Altered groupC1ORF2261q23.39.368.880.581.130.486.63E-050.0118Altered groupFGFR45q35.212.6812.030.791.50.656.71E-050.0118Altered groupUBE2R29p13.311.2811.050.30.380.236.98E-050.0119Altered groupLCN29q34.1111.399.192.863.482.27.48E-050.012Altered groupRELN7q22.19.967.92.663.842.068.93E-050.0134Altered groupRPL78q21.1110.7810.20.770.920.589.17E-050.0136Altered groupGPATCH41q22-q23.110.259.760.660.670.499.67E-050.0142Altered groupRRP1210q24.110.019.580.570.760.439.97E-050.0144Altered groupAGO28q24.37.947.40.730.780.541.04E-040.0149Altered groupEIF2S114q23.310.5310.230.410.450.31.34E-040.0175Altered groupNOB116q22.110.139.750.510.680.381.43E-040.0183Altered groupWSCD117p13.276.021.341.70.981.44E-040.0183Altered groupTRMT514q23.18.658.380.380.480.281.80E-040.0217Altered groupNOP165q35.29.088.570.710.830.51.92E-040.0223Altered groupSCO117p13.19.328.930.550.60.391.99E-040.0227Altered groupEIF4A117p13.113.3412.950.560.720.392.47E-040.0262Altered groupFTL19q13.3318.5417.781.11.170.762.55E-040.0266Altered groupATP6V1C18q22.311.3710.880.710.750.492.57E-040.0266Altered groupTUFT11q21.38.818.350.640.940.452.68E-040.0271Altered groupSLC51B15q22.317.015.631.982.261.372.82E-040.0281Altered groupFABP12p11.214.8713.461.993.061.413.28E-040.0309Altered groupWDR555q31.39.599.230.530.50.363.35E-040.0311Altered groupSSB2q31.110.8910.620.380.520.263.62E-040.0325Altered groupLYAR4p16.38.528.130.580.660.393.73E-040.0332Altered groupHSPA811q24.114.5414.120.620.810.423.85E-040.0338Altered groupTSPO26p21.14.263.181.611.741.083.97E-040.0346Altered groupATIC2q3511.2110.840.560.620.374.46E-040.0369Altered groupBMP220p12.38.747.791.451.330.954.63E-040.0378Altered groupTUBB2A6p25.211.8211.180.961.150.644.66E-040.0379Altered groupBYSL6p21.19.359.020.50.650.335.05E-040.0393Altered groupEPS8L31p13.38.346.712.443.261.635.10E-040.0393Altered groupDDX319q34.137.867.590.420.520.285.16E-040.0394Altered groupRPL22L13q26.210.399.541.291.330.845.23E-040.0395Altered groupC1QBP17p13.211.0110.610.610.710.45.77E-040.0418Altered groupC2ORF722q37.112.3811.930.680.950.456.01E-040.043Altered groupNLRX111q23.39.088.80.420.660.286.34E-040.0448Altered groupSNTB18q24.1212.2511.80.6710.456.52E-040.0455Altered groupFBXO258p23.39.99.40.780.860.56.68E-040.0456Altered groupGYG13q249.28.820.590.680.386.81E-040.0459Altered groupEIF5B2q11.211.5311.170.570.50.366.88E-040.046Altered groupPARP127q3410.4910.10.610.740.396.96E-040.046Altered groupLRATD28q24.219.99.30.941.150.67.16E-040.0465Altered groupPLPPR19q31.18.827.841.531.910.987.28E-040.047Altered groupSHROOM15q31.111.0510.590.730.980.477.77E-040.0482Altered groupITGA62q31.111.0610.520.860.90.548.17E-040.0496Altered groupPRKG24q21.210.10.530.270.97-0.433.33E-092.34E-05Unaltered groupKIAA00877p15.20.030.260.110.62-0.236.18E-093.10E-05Unaltered groupLOC14547414q24.20.010.140.060.37-0.131.97E-087.90E-05Unaltered groupFAM83B6p12.10.170.960.581.79-0.795.19E-081.29E-04Unaltered groupANGPTL71p36.220.120.810.381.92-0.696.45E-081.29E-04Unaltered groupLOC28479820p11.210.010.190.060.55-0.186.71E-081.29E-04Unaltered groupFRG2C3p12.30.020.210.120.5-0.196.91E-081.29E-04Unaltered groupVIT2p22.20.040.280.150.64-0.248.06E-081.29E-04Unaltered groupEPHA76q16.10.180.830.481.51-0.668.37E-081.29E-04Unaltered groupFGF178p21.312.010.881.62-1.011.03E-071.38E-04Unaltered groupCLLU1OS12q220.080.460.241.04-0.381.20E-071.50E-04Unaltered groupMEP1B18q12.10.651.730.912.04-1.081.40E-071.66E-04Unaltered groupCKMT25q14.11.282.671.142.86-1.391.49E-071.66E-04Unaltered groupMORN59q33.20.020.170.10.41-0.153.01E-073.02E-04Unaltered groupGOLGA6D15q24.20.10.480.271.02-0.383.38E-073.08E-04Unaltered groupSHC415q21.11.312.250.821.97-0.944.85E-074.06E-04Unaltered groupHNRNPCL11p36.210.040.50.231.46-0.466.16E-074.42E-04Unaltered groupPROM22q11.11.682.720.962.17-1.041.07E-066.92E-04Unaltered groupLGI110q23.330.190.710.441.33-0.531.26E-067.46E-04Unaltered groupMIR1-1HG-AS120q13.330.250.770.481.15-0.521.51E-068.48E-04Unaltered groupMPIG6B6p21.330.010.130.080.35-0.112.15E-061.17E-03Unaltered groupGLIS3-AS19p24.20.050.250.180.51-0.22.51E-061.33E-03Unaltered groupCALHM46q22.10.030.220.140.58-0.193.04E-061.57E-03Unaltered groupLYPD319q13.313.494.61.21.4-1.123.14E-061.58E-03Unaltered groupVAX110q25.30.020.280.10.95-0.263.60E-061.76E-03Unaltered groupIL36RN2q14.10.010.170.070.57-0.163.83E-061.80E-03Unaltered groupSEC14L322q12.21.373.131.892.38-1.753.92E-061.80E-03Unaltered groupPEBP48p21.30.521.591.062.33-1.074.38E-061.95E-03Unaltered groupUSP4412q220.471.150.71.4-0.684.98E-062.18E-03Unaltered groupRPS6KA6Xq21.10.210.770.541.42-0.566.12E-062.57E-03Unaltered groupBMP102p13.30.060.410.281.06-0.356.14E-062.57E-03Unaltered groupCHRM27q330.070.370.260.86-0.36.27E-062.57E-03Unaltered groupPLEKHH317q21.28.259.020.880.79-0.777.02E-062.82E-03Unaltered groupSNX29P216p11.22.894.061.331.45-1.177.76E-063.06E-03Unaltered groupPLD51q430.441.110.671.63-0.678.73E-063.26E-03Unaltered groupPABPN1L16q24.30.020.150.110.38-0.139.46E-063.37E-03Unaltered groupC10ORF6710p12.20.210.70.511.12-0.499.55E-063.37E-03Unaltered groupGSTA56p12.20.040.220.170.46-0.189.91E-063.43E-03Unaltered groupSBK116p12.13.564.591.161.67-1.031.02E-053.43E-03Unaltered groupFTHL17Xp21.20.030.350.161.22-0.321.16E-053.67E-03Unaltered groupKCNN25q22.32.823.730.952.13-0.911.17E-053.67E-03Unaltered groupLINC0163422q11.210.310.750.480.97-0.451.21E-053.74E-03Unaltered groupKIAA0895L16q22.16.427.070.760.9-0.651.27E-053.86E-03Unaltered groupCALML510p15.10.060.310.190.89-0.261.34E-054.03E-03Unaltered groupZNF7357q11.210.090.470.271.3-0.381.40E-054.13E-03Unaltered groupRAB251q221.112.241.172.89-1.131.86E-055.26E-03Unaltered groupLTB4R214q124.595.310.861.01-0.722.11E-055.65E-03Unaltered groupSERPINB518q21.330.350.940.621.58-0.592.73E-057.12E-03Unaltered groupMS4A311q12.10.020.140.10.44-0.132.89E-057.28E-03Unaltered groupMS4A211q12.10.961.911.131.7-0.952.91E-057.28E-03Unaltered groupATG16L211q13.47.498.160.830.75-0.662.96E-057.28E-03Unaltered groupIGFALS16p13.35.497.592.62.73-2.12.97E-057.28E-03Unaltered groupCCDC393q26.331.792.520.881.21-0.733.15E-057.61E-03Unaltered groupPLCZ112p12.30.110.350.250.61-0.233.23E-057.73E-03Unaltered groupPTCHD1Xp22.110.230.620.411.07-0.393.58E-058.37E-03Unaltered groupCCNL21p36.3310.3110.940.80.78-0.633.91E-058.92E-03Unaltered groupARPP213p22.31.422.451.212.34-1.044.02E-058.92E-03Unaltered groupSH2B116p11.29.579.950.490.5-0.384.26E-059.24E-03Unaltered groupASB16-AS117q21.316.777.190.530.68-0.424.28E-059.24E-03Unaltered groupSLC6A1512q21.310.220.820.542.02-0.64.46E-059.48E-03Unaltered groupCDH125p14.31.712.791.32.22-1.084.52E-059.48E-03Unaltered groupNEAT111q13.111.8712.6511.07-0.784.90E-050.0101Unaltered groupMAPT-IT117q21.310.71.370.821.31-0.674.92E-050.0101Unaltered groupSLC5A72q12.30.020.190.110.67-0.175.09E-050.0103Unaltered groupKBTBD123q21.30.370.920.61.57-0.555.38E-050.0106Unaltered groupSLC38A816q23.30.260.790.511.71-0.535.39E-050.0106Unaltered groupOR3A217p13.30.020.140.10.48-0.135.53E-050.0108Unaltered groupMRGPRX311p15.10.050.270.180.8-0.225.64E-050.0108Unaltered groupGPR1505q150.370.850.581.06-0.485.71E-050.0108Unaltered groupADAM301p120.030.170.140.41-0.145.80E-050.0109Unaltered groupASCL112q23.21.272.751.852.91-1.486.67E-050.0118Unaltered groupPOTEC18p11.210.020.130.090.4-0.116.84E-050.0118Unaltered groupKCTD84p130.10.40.291-0.36.88E-050.0118Unaltered groupVAMP112p13.316.517.230.950.94-0.727.12E-050.0119Unaltered groupSCNN1D1p36.335.876.81.231.23-0.937.28E-050.0119Unaltered groupTNRC6A16p12.19.439.890.60.64-0.467.31E-050.0119Unaltered groupANXA810q11.221.382.741.742.51-1.367.33E-050.0119Unaltered groupMRGPRE11p15.40.010.130.060.53-0.127.55E-050.012Unaltered groupLINC000329p21.20.020.130.120.32-0.117.57E-050.012Unaltered groupRLBP115q26.10.030.170.140.46-0.148.24E-050.0128Unaltered groupLARP615q234.615.861.642.03-1.258.42E-050.0129Unaltered groupRBFOX317q25.30.340.770.550.81-0.438.43E-050.0129Unaltered groupCHRNA94p140.020.180.10.7-0.178.90E-050.0134Unaltered groupVASN16p13.39.4510.231.060.86-0.789.28E-050.0137Unaltered groupMAFB20q128.799.480.91.14-0.689.78E-050.0142Unaltered groupSLC36A25q33.10.10.360.260.92-0.261.08E-040.0153Unaltered groupMYO15B17q25.19.2910.071.061.2-0.781.21E-040.0165Unaltered groupANKRD232q11.24.695.290.840.82-0.611.26E-040.017Unaltered groupMBD43q21.39.279.540.360.49-0.271.31E-040.0175Unaltered groupSUN17p22.310.3410.770.590.65-0.431.33E-040.0175Unaltered groupST6GALNAC217q25.14.565.781.671.84-1.221.34E-040.0175Unaltered groupLOC1001280769q22.310.020.120.090.42-0.111.39E-040.018Unaltered groupENGASE17q25.38.619.080.660.66-0.471.49E-040.0188Unaltered groupMYL77p130.020.140.10.48-0.121.65E-040.0206Unaltered groupCALB216q22.20.571.120.691.48-0.551.70E-040.0211Unaltered groupTSPYL62p16.20.030.20.150.66-0.171.75E-040.0216Unaltered groupDCUN1D213q347.27.640.620.68-0.441.76E-040.0216Unaltered groupIL13RA2Xq231.612.561.242.19-0.951.77E-040.0216Unaltered groupCLTRNXp22.24.515.741.712.17-1.241.79E-040.0217Unaltered groupMAS1L6p22.10.040.240.240.6-0.21.83E-040.0219Unaltered groupMAPK8IP316p13.38.539.220.990.87-0.691.85E-040.022Unaltered groupPWRN115q11.20.020.130.10.44-0.111.87E-040.0221Unaltered groupC16ORF9216p11.20.030.140.120.38-0.111.91E-040.0223Unaltered groupCT47A6Xq240.030.270.161.06-0.241.92E-040.0223Unaltered groupPILRB7q22.19.4610.040.820.78-0.581.96E-040.0226Unaltered groupLINC0093015q26.10.290.670.471.01-0.372.00E-040.0227Unaltered groupLOC1001295341p36.323.664.3711.11-0.712.03E-040.0227Unaltered groupTNFRSF14-AS11p36.326.237.031.111.34-0.792.04E-040.0228Unaltered groupSYT911p15.40.862.131.732.74-1.282.09E-040.023Unaltered groupST511p15.49.3810.11.040.79-0.722.18E-040.0237Unaltered groupFAM71E219q13.420.020.160.10.65-0.152.30E-040.0249Unaltered groupARGFXP217q11.20.220.480.350.6-0.262.31E-040.0249Unaltered groupDLGAP28p23.30.571.160.771.5-0.592.33E-040.0249Unaltered groupCROCCP31p36.134.144.660.740.9-0.522.49E-040.0262Unaltered groupHEXIM117q21.319.59.960.680.62-0.462.59E-040.0266Unaltered groupMYO3A10p12.10.210.680.521.67-0.472.60E-040.0266Unaltered groupPHLDB23q13.28.969.570.890.89-0.612.65E-040.027Unaltered groupULK4P215q13.20.120.360.330.62-0.252.68E-040.0271Unaltered groupPCP219p13.21.42.161.091.36-0.762.75E-040.0276Unaltered groupCRYBA117q11.20.050.20.20.4-0.152.82E-040.0281Unaltered groupADSSL114q32.337.248.081.221.4-0.852.86E-040.0281Unaltered groupKLHL171p36.336.166.660.730.73-0.52.87E-040.0281Unaltered groupADGB6q24.30.030.170.140.5-0.132.89E-040.0281Unaltered groupGCSAML1q440.320.810.641.31-0.492.90E-040.0281Unaltered groupKRTAP5-811q13.40.40.780.530.85-0.383.06E-040.0295Unaltered groupPLEKHM1P117q24.16.16.670.860.8-0.583.21E-040.0307Unaltered groupBRICD516p13.33.744.571.241.19-0.843.24E-040.0308Unaltered groupANKRD351q21.13.415.142.572.61-1.743.26E-040.0308Unaltered groupSSMEM17q32.20.030.130.120.33-0.13.30E-040.0309Unaltered groupCSNK1A1P115q140.761.20.61.06-0.443.34E-040.0311Unaltered groupSS18L120q13.339.159.590.630.88-0.443.36E-040.0311Unaltered groupSCEL13q22.30.090.310.270.69-0.223.40E-040.0312Unaltered groupTNNT21q32.11.021.791.071.92-0.783.41E-040.0312Unaltered groupZGPAT20q13.3310.1610.60.621.01-0.443.42E-040.0312Unaltered groupGFAP17q21.311.752.861.621.97-1.113.43E-040.0312Unaltered groupCSAD12q13.138.419.141.071.21-0.733.60E-040.0325Unaltered groupSNED12q37.37.357.980.921.11-0.633.63E-040.0325Unaltered groupANKS316p13.37.648.080.660.73-0.443.69E-040.0329Unaltered groupPPL16p13.37.648.891.91.47-1.253.76E-040.0333Unaltered groupTNNI3K1p31.10.811.350.791.07-0.543.82E-040.0336Unaltered groupCASTOR37q22.16.457.040.881.04-0.594.05E-040.0349Unaltered groupDPF314q24.23.264.041.111.71-0.774.06E-040.0349Unaltered groupPRSS816p11.24.136.423.423.81-2.294.14E-040.0354Unaltered groupSTAG3L37q11.236.577.10.810.78-0.534.18E-040.0355Unaltered groupFAM177B1q410.531.040.691.39-0.514.26E-040.036Unaltered groupGABREXq286.337.762.192-1.444.30E-040.0361Unaltered groupARHGAP3319q13.126.46.950.811-0.544.39E-040.0366Unaltered groupWFDC220q13.122.554.022.153.2-1.484.46E-040.0369Unaltered groupZNF300P15q33.12.333.191.241.99-0.864.71E-040.0381Unaltered groupCDH718q22.10.10.390.351.08-0.34.75E-040.0384Unaltered groupNCAM111q23.23.214.161.392.18-0.964.82E-040.0386Unaltered groupGARNL39q33.34.475.371.371.53-0.94.84E-040.0386Unaltered groupCELF519p13.32.223.682.22.68-1.464.84E-040.0386Unaltered groupHOXD112q31.10.210.620.511.37-0.414.92E-040.0391Unaltered groupRGL26p21.329.439.790.540.69-0.365.07E-040.0393Unaltered groupSLC1A619p13.120.030.190.160.7-0.165.07E-040.0393Unaltered groupCD164L21p36.110.080.280.230.8-0.215.12E-040.0393Unaltered groupNTF419q13.330.040.190.160.61-0.155.12E-040.0393Unaltered groupAMOTL23q22.28.589.170.891.13-0.595.23E-040.0395Unaltered groupKRT1617q21.20.551.331.072.29-0.785.23E-040.0395Unaltered groupRNF396p22.11.912.731.231.56-0.825.26E-040.0395Unaltered groupCR1L1q32.20.350.780.591.25-0.435.36E-040.0401Unaltered groupATP6V1G26p21.332.583.251.021.22-0.675.38E-040.0401Unaltered groupNEBL10p12.314.165.542.12.66-1.395.45E-040.0404Unaltered groupNYAP22q36.30.040.230.180.82-0.195.46E-040.0404Unaltered groupFBXL1616p13.33.234.742.312.5-1.55.51E-040.0407Unaltered groupANKRD26P313q12.110.020.120.10.43-0.15.68E-040.0416Unaltered groupLINC004726q131.321.960.981.11-0.635.73E-040.0417Unaltered groupBAIAP2-DT17q25.38.599.110.790.88-0.515.88E-040.0425Unaltered groupFGF2312p13.320.160.450.341.13-0.295.93E-040.0426Unaltered groupTPTEP222q13.13.113.831.140.96-0.725.94E-040.0426Unaltered groupLTB4R14q126.487.181.091.06-0.76.07E-040.0432Unaltered groupRNF16518q21.12.523.521.541.88-16.16E-040.0437Unaltered groupZMAT48p11.210.170.50.421.16-0.336.50E-040.0455Unaltered groupLINC0224915q13.20.240.660.591.26-0.436.55E-040.0455Unaltered groupADRB110q25.31.912.851.461.76-0.946.57E-040.0455Unaltered groupMIR99AHG21q21.13.384.181.221.6-0.86.62E-040.0456Unaltered groupRFPL3S22q12.31.311.961.021.17-0.656.65E-040.0456Unaltered groupCBLN314q124.775.591.281.37-0.826.72E-040.0456Unaltered groupDGKE17q225.786.481.081.28-0.76.72E-040.0456Unaltered groupZDHHC115p15.334.645.571.451.65-0.936.79E-040.0459Unaltered groupCCDC160Xq26.20.140.410.380.87-0.286.83E-040.0459Unaltered groupCATSPERD19p13.30.020.130.110.46-0.116.98E-040.046Unaltered groupFAM13A4q22.17.668.481.281.6-0.827.01E-040.046Unaltered groupPRB312p13.20.020.130.110.46-0.117.02E-040.046Unaltered groupTRIM24q31.37.988.671.081.25-0.697.02E-040.046Unaltered groupTCAP17q123.063.981.421.89-0.927.09E-040.0463Unaltered groupPOLM7p138.58.790.450.48-0.287.20E-040.0467Unaltered groupPDXDC2P-NPIPB14P16q22.17.087.851.250.98-0.777.40E-040.0476Unaltered groupRASSF51q32.17.818.451.011.1-0.647.46E-040.0477Unaltered groupLINC001151p36.333.94.40.80.87-0.57.47E-040.0477Unaltered groupBDKRB214q32.25.626.571.51.77-0.967.52E-040.0477Unaltered groupRARA17q21.210.2610.630.590.64-0.377.54E-040.0477Unaltered groupCOL25A14q250.911.560.991.48-0.657.57E-040.0477Unaltered groupTSSK31p35.13.954.591.021.13-0.647.59E-040.0477Unaltered groupTULP16p21.310.080.250.220.56-0.167.64E-040.0477Unaltered groupCCDC7816p13.32.313.181.361.59-0.877.64E-040.0477Unaltered groupSH3BP24p16.39.329.910.950.84-0.597.70E-040.0479Unaltered groupCAPZA312p12.30.781.420.991.31-0.647.81E-040.0483Unaltered groupNFE2L117q21.3212.7513.10.550.66-0.357.93E-040.0489Unaltered groupPLET111q23.10.070.220.20.49-0.157.97E-040.049Unaltered groupTRHDE-AS112q21.10.8521.782.56-1.158.02E-040.049Unaltered groupRPL32P33q21.35.996.420.680.79-0.438.02E-040.049Unaltered groupDCAF12L2Xq250.110.370.360.84-0.268.14E-040.0495Unaltered group ................
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