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In brief, sequences were aligned against the reference Wuhan-Hu-1/2019 genome of SARS-CoV-2 (GenBank accession MN908947) using MAFFT4, the alignment was visually inspected, manually curated and further used to build a maximum likelihood phylogenetic tree based on the GTR model using IQ-TREE5 following the Nextstrain implementation (the first ... ................
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