1 - University of California, Berkeley
1. You have cloned a region of interest and want to determine the cloned region’s position relative to a chromosome band. List two techniques you could use to obtain this data.
FISH ……….or sequence the insert and use homology in the assembled human genome to determine its location relative to the chromosome band.
b) Which technique will allow you the highest resolution of the cloned region’s location?
sequencing
2. Iceland was populated almost entirely by male Viking raiders and their female Irish slaves about 1200 years ago. A given allele of a genetic marker is found in 94 of 100 Icelanders affected with a rare dominant condition; but that allele is almost never found in unaffected individuals. Assuming 20 years/generation, approximately how far is the gene for this condition from the marker?
(6 individuals without marker/ 100 individuals)*(1 recombinant chromosome/ individual without marker) * (1 chromosome/1200 years)*(20 years/meiosis) = 6/(100*2*60)=1/2000=0.001 recombinant chroms/meiosis=0.1cM
3. Below is a pedigree for a family showing the genotype of a certain genetic marker for all individuals. Individuals with large noses are marked with filled in shapes. The schnozz phenotype is controlled by a single locus with two alleles: N, which is dominant and leads to the large nose phenotype; and n, which produces a normal nose.
[pic]
a) What is the haplotype phase of the father in generation 2?
A1 N/ A2 n
b) How many children in generation 3 inherited a recombinant chromosome from their father?
2
c) Calculate the Odds Ratio that the gene for the large nose locus and this genetic marker are linked.
(2/8)^2 * (6/8)^6 / (1/2)^8 = 3^6 * (1/4)^8/(1/2)^8 = 3^6/2^8
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A1A2
A1A2
A1A2
A1A2
A1A2
A1A2
A1A3
A1A1
A1A1
A1A1
A1A1
A1A1
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