Visualizing and Clustering High-Throughput Data with R ...
Visualizing and Clustering High-Throughput Data with R/Bioconductor
Overview
Thomas Girke
December 5, 2014
Visualizing and Clustering High-Throughput Data with R/Bioconductor
Slide 1/121
Overview
Graphics Environments Base Graphics Grid Graphics lattice ggplot2
Specialty Graphics
Genome Graphics ggbio Additional Genome Graphics
Clustering Background Hierarchical Clustering Example Non-Hierarchical Clustering Examples
Visualizing and Clustering High-Throughput Data with R/Bioconductor
Slide 2/121
Outline
Overview
Graphics Environments Base Graphics Grid Graphics lattice ggplot2
Specialty Graphics
Genome Graphics ggbio Additional Genome Graphics
Clustering Background Hierarchical Clustering Example Non-Hierarchical Clustering Examples
Visualizing and Clustering High-Throughput Data with R/Bioconductor
Overview
Slide 3/121
Graphics in R
Powerful environment for visualizing scientific data Integrated graphics and statistics infrastructure Publication quality graphics Fully programmable Highly reproducible Full LATEX Link & Sweave Link support Vast number of R packages with graphics utilities
Visualizing and Clustering High-Throughput Data with R/Bioconductor
Overview
Slide 4/121
Documentation on Graphics in R
General Graphics Task Page Link R Graph Gallery Link R Graphical Manual Link Paul Murrell's book R (Grid) Graphics Link
Interactive graphics rggobi (GGobi) Link iplots Link Open GL (rgl) Link
Visualizing and Clustering High-Throughput Data with R/Bioconductor
Overview
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