ChemDraw v17.0 User Guide - Columbia University …

ChemDraw 17.0 User Guide

ChemDraw 17.0

Table of Contents

Recent Additions

vii

Chapter 1: Introduction

1

About this Guide

1

Chapter 2: Getting Started

4

About ChemDraw Tutorials

4

ChemDraw User Interface

4

Toolbars

5

Documents

6

Chapter 3: Page Layout

15

The Drawing Area

15

The Document Type

15

Printing

17

Saving Page Setup Settings

18

35mm Slide Boundary Guides

18

Viewing Drawings

19

Tables

21

Chapter 4: Preferences and Settings

25

Setting Preferences

25

Customizing Toolbars

29

Document and Object Settings

29

Customizing Hotkeys

39

Working with Color

42

Document Settings

45

Chapter 5: Shortcuts and Hotkeys

51

Atom Hotkeys

51

Bond Hotkeys

54

Generic Hotkeys (tool switching hotkeys)

55

? Copyright 1998-2017 PerkinElmer Informatics Inc., All rights reserved.

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ChemDraw 17.0

Modified Hotkeys

57

Drawing Reactions Using Hotkeys

57

58

Shortcuts

58

Nicknames

62

Chapter 6: Basic Drawings

64

Bonds

64

Atoms

69

Captions

70

Drawing Rings

79

Chains

82

Objects

83

Clean Up Structure

100

Checking Structures

102

Chemical Warnings

102

Chapter 7: BioDraw (Professional Level only)

105

BioDraw Templates

105

Customizable Objects

108

Chapter 8: Drawing Biopolymers

114

Biopolymer Editor

115

Protecting Groups

116

Pasting Sequences

117

Expanding Sequences

119

Contracting Labels

119

Modifying Sequence Residues

120

Merging Sidechains with Residue

120

Hybrid Biopolymers

124

IUPAC Codes

124

? Copyright 1998-2017 PerkinElmer Informatics Inc., All rights reserved.

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ChemDraw 17.0

Disulfide Bridges

129

Lactam Bridges

130

Chapter 9: Drawing Monomer Sequences

131

Drawing Amino Acid Sequences

134

Drawing RNA Sequences

140

Replacing Monomers

142

Copying Sequence(s) as HELM String

143

Pasting HELM Strings

144

Monomer Editors

144

Chapter 10: Advanced Drawing Techniques

151

Coloring Objects

151

Labels

152

Attachment Points

155

Atom Numbering

157

Structure Perspective

159

Mass Fragmentation

159

Drawing Reactions

162

Stoichiometry Grid

168

Templates

171

Defining Nicknames

173

ChemScript

176

Chapter 11: Struct=Name (Professional Level)

178

Struct>Name

178

Name>Struct

182

Adding Structures to a Dictionary

184

Dictionary of FDA Approved Drugs

184

Chapter 12: Chemistry Features

185

Structure Analysis

185

? Copyright 1998-2017 PerkinElmer Informatics Inc., All rights reserved.

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ChemDraw 17.0

Stereochemistry

186

Chemical Properties

190

Chemical Annotations

197

3D Viewing

201

TLC

204

ChemNMR (Professional Level)

209

Chapter 13: ChemDraw/Excel and CombiChem

217

Setting Up ChemDraw/Excel

217

Importing tables

217

Importing hit lists

218

Exporting tables

218

Synchronizing Tables

219

Adding structures

220

Searching

221

R-Group analysis

222

Working with Structures

223

ChemDraw/Excel Functions

225

Chemical Properties

239

General Preferences

247

CombiChem

249

Chapter 14: ChemScript

257

Why use ChemScript?

257

How ChemScript works

258

Getting Started

258

Editing Scripts

259

Introducing the ChemScript API

260

Tutorials

261

Useful References

264

? Copyright 1998-2017 PerkinElmer Informatics Inc., All rights reserved.

iv

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