GAURAV NARALE



GAURAV NARALE

8520, COSTA VERDE BLVD CELL: (315)–450- 9337

APT 3114, SAN DIEGO CA gnarale@biomail.ucsd.edu

OBJECTIVE: Bioinformatics - Software Engineer - Data Analyst position.

Currently Working as Software Engineer Intern at Dept of Computer Science, UCSD.

Projects:

• Mass Spectroscopy Data Analysis and Visualization: Written code in C++ on Unix platform to develop an application to analyze mass spec data and generate graphical output of mass spec spectrum based upon data. Worked on peptide server of UCSD, used GD graphics library to generate mass spec spectrum and generate output in the form of jpg and png images. (Dr. Bafna)

• Protein Functional Database Design and Operation: Designed schema for a complete protein database (specific to PTS pathway system) and created the tables and columns using mysql. Used local blast to generate data. Written programs extensively in Java, Perl, CGI and PHP to parse the output data, generate sql queries and update database. Database connectivity using Java JDBC- Connector/J and Perl to mysql database.

SUMMARY OF QUALIFICATIONS

An accomplished Software Engineer specialized with extensive experience in the field of Scientific Software Development to design, develop and implement applications. Written approx. 20000 lines of code to design front-end back-end applications, analyze and process scientific data and generate customized output in different visual formats.

➢ Masters in Chemical Engineering with 2+ years of extensive Computational Chemistry and Scientific Software Development Experience on Windows and Unix (Mac, Solaris).

➢ Expertise in Object Oriented Analysis/Design in Java. Solid knowledge of client-server architecture. Skilled in advanced J2EE technologies JSP, Servlets.

➢ Expertise in Microsoft technologies in C, C++ and Server side scripts using ASP, PHP from HTML and JavaScript, VbScript interface. Extensive work experience handling various databases, data migration and management. Professional experience in designing WebPages, creating company logos and animations.

➢ Extensive experience in data analysis and visualization, datamining of specific molecules in genomic database, 3D modeling of molecules, molecular dynamics and energy minimization, sequence alignment and homology, phylogenetic analysis and evolutionary pathway studies.

TECHNICAL EXPERTISE

Programming: Java, J2EE, JSP, Servlets, JDBC, SAX/DOM, Beans, C++, C, ASP.

Server Side Scripts: Perl, Python, Shell Script, VbScript, JavaScript, CGI, PHP, ColdFusion

RDBMS: Oracle, Sybase, MySQL

Web Servers: IIS, PWS, JWS, Apache, Weblogic.

Development Tools: Forte, Prism, Visual Studio, WinCVS, CompareIt.

Platforms: Unix, SGI, Mac, Windows, Distributed computing.

Gaurav Narale PAGE-2

PROFESSIONAL EXPERIENCE

Software Engineering Intern, San Diego CA

Dept. of Computer Science, University of California San Diego 6/04 – Present

Software Engineer, Syracuse, NY

Health Science Center. 5/03 – 5/04

▪ Programming in C and C++ to develop bioinformatics software utilities to parse sequences, convert formats and data extraction. Datamining and identification novel RNA molecules in genomic sequence database using computational techniques.

▪ 2D profile matching, computational search, identification and modeling of enzyme RNase MRP in yeast genome to determine its role in disease called Cartilage-hair hypoplasia.

▪ Administered UNIX, SGI and Solaris parallel computing clusters.

My work resulted in a publication in journal of 'Lecture notes in Computer Science' (2004).

Software Engineer, Nagpur, India

Premier Technology Group alliance EZData Corporation, Pasadena CA. 7/01 – 7/02

▪ Worked on Enterprise CRM platform, programming in Java, front-end back-end communication, JSP and Servlet handling, hands on with server configuration, database handling and management, query generation, data submission and retrieval.

▪ Written approx 10000 lines of code in java to design a web based email client using Java Mail APIs. Worked on a number of modules for generation of crystal reports, dynamic pdf generations.

ACADEMIC BACKGROUND

Syracuse University, Syracuse, NY

Masters in Chemical Engineering, Spn. in Bioinformatics [3.4/4.0]

Thesis: Computational Identification RNA Motifs in Genome Sequences

(Advisor: Mark Schmitt, SUNY Upstate Medical Univ, NY)

Laxminarayan Institute of Technology, India

Bachelors in Chemical Engineering [3.9/4.0]

Awards and Honors

▪ 'Young Investigator', Young Investigator Sponsorship Program, eCheminformatics 2003 Conference, Application of Cheminformatics to Drug Discovery, Nov 10-14

▪ College of Engineering Merit Scholarship, Syracuse University, NY.

Publications

▪ Gaurav Narale, Jacques Beaumont, Philip A. Rice, Mark E. Schmitt. Computational Identification of RNA Motifs in Genome Sequences, Lecture Notes in Computer Science, Publisher: Springer-Verlag Heidelbergpp. 138 : 143 (2004)

▪ Gaurav Narale, Mark Schmitt. RNA Motif Identification in Genomic Databases. Proceedings at Biomedical Science Retreat, Skaneateles Falls, NY.05 Sep (2003)

Posters

▪ eCheminformatics 2003, Virtual conference in ‘Application of cheminformatics to drug discovery’, 10-14 Nov, 2003

▪ Biomedical Science Retreat, Skaneateles Falls, NY.05 Sep, 2003.

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