Python Pipelines - Massachusetts Institute of Technology
Python
Pipelines
Hi, I'm Andy.
? ~20 years of coding ? I code for:
? fun ? profit ? non-profit ? you
Type less.
Do more.
Today:
? Make commands ? Connect them ? Make a library ? Use a library Intros to Unix & Python see:
Simple Example
samtools view -bS test1.sam > test1.bam samtools sort test1.bam test1.sorted samtools index test1.sorted
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