HyperSpec: Work with Hyperspectral Data, i.e. Spectra + Meta ...

Package `hyperSpec'

October 13, 2022

Encoding UTF-8 Type Package Title Work with Hyperspectral Data, i.e. Spectra + Meta Information

(Spatial, Time, Concentration, ...) Version 0.100.0 Date 2021-09-13 Maintainer Claudia Beleites Description Comfortable ways to work with hyperspectral data sets.

I.e. spatially or time-resolved spectra, or spectra with any other kind of information associated with each of the spectra. The spectra can be data as obtained in XRF, UV/VIS, Fluorescence, AES, NIR, IR, Raman, NMR, MS, etc. More generally, any data that is recorded over a discretized variable, e.g. absorbance = f(wavelength), stored as a vector of absorbance values for discrete wavelengths is suitable. License GPL (>= 3) LazyLoad yes LazyData yes Depends R (>= 3.6.0), lattice, grid, ggplot2 (>= 2.2.0), xml2 Suggests R.matlab, tripack, deldir, rgl, plotrix, sp, baseline, compiler, inline, Rcpp, MASS, fastcluster, pls, mvtnorm, digest, reshape, devtools, R.rsp, tibble Imports testthat, methods, utils, latticeExtra, lazyeval, dplyr

URL (documentation), (code)

BugReports VignetteBuilder R.rsp Collate 'validate.R' 'hyperspec-class.R' 'unittest.R' 'paste.row.R'

'Arith.R' 'Compare.R' 'DollarNames.R' 'Math.R' 'chk.hy.R' 'read.txt.wide.R' 'read.txt.long.R' 'options.R' 'wl.R' 'fileio.optional.R' 'NEW-functions.R' 'Summary.R' 'aggregate.R'

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'all.equal.R' 'apply.R' 'as.data.frame.R' 'barbiturates.R' 'bind.R' 'call.list.R' 'chondro.R' 'colMeans.R' 'collapse.R' 'count_lines.R' 'cov.R' 'decomposition.R' 'deprecated.R' 'dim.R' 'dimnames.R' 'droplevels.R' 'empty.R' 'wl2i.R' 'extract.R' 'factor2num.R' 'fix_spc_colnames.R' 'flu.R' 'getbynames.R' 'regexps.R' 'guesswavelength.R' 'paracetamol.R' 'laser.R' 'hyperspec-package.R' 'initialize.R' 'labels.R' 'plotmap.R' 'levelplot.R' 'makeraster.R' 'map.identify.R' 'map.sel.poly.R' 'mark.dendrogram.R' 'mark.peak.R' 'matlab.palette.R' 'mean_sd.R' 'merge.R' 'mvtnorm.R' 'normalize01.R' 'orderwl.R' 'pearson.dist.R' 'plot.R' 'plotc.R' 'plotmat.R' 'plotspc.R' 'plotvoronoi.R' 'qplot.R' 'qplotmixmap.R' 'quantile.R' 'rbind.fill.R' 'read.ENVI.R' 'read.ENVI.HySpex.R' 'read.ENVI.Nicolet.R' 'read.txt.Witec.R' 'read.asc.Andor.R' 'read.asc.PerkinElmer.R' 'read.ini.R' 'read.jdx.R' 'read.mat.Cytospec.R' 'read.mat.Witec.R' 'read.spc.Kaiser.R' 'read.spc.R' 'read.spc.Shimadzu.R' 'read.spe.R' 'read.txt.Horiba.R' 'read.txt.Renishaw.R' 'read.txt.Shimadzu.R' 'replace.R' 'sample.R' 'scale.R' 'seq.R' 'show.R' 'spc.NA.approx.R' 'spc.bin.R' 'spc.fit.poly.R' 'spc.identify.R' 'spc.loess.R' 'spc.rubberband.R' 'spc.spline.R' 'split.R' 'split.string.R' 'splitdots.R' 'subset.R' 'sweep.R' 'trellis.factor.key.R' 'units.R' 'vandermonde.R' 'wc.R' 'wleval.R' 'write.txt.long.R' 'write.txt.wide.R' 'y-pastenames.R' 'zzz.R'

RoxygenNote 7.1.1

NeedsCompilation no

Author Claudia Beleites [aut, cre, dtc] (), Valter Sergo [aut], Alois Bonifacio [ctb, dtc], Marcel Dahms [ctb], Bj?rn Egert [ctb], Simon Fuller [ctb], Vilmantas Gegzna [ctb], Rustam Guliev [ctb], Bryan A. Hanson [ctb], Michael Hermes [ctb], Martin Kammer [dtc], Roman Kiselev [ctb], Sebastian Mellor [ctb]

Repository CRAN

Date/Publication 2021-09-13 13:00:02 UTC

R topics documented:

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R topics documented:

hyperSpec-package . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 .cluster.wavelengths . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 .collapse.equal . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 .DollarNames.hyperSpec . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 .fix_spc_colnames . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 .read.spe.xml . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 .read.spe.xml_string . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 aggregate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 apply . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10 Arith . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 as.character,hyperSpec-method . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 as.data.frame . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15 as.hyperSpec . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17 barbiturates . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18 bind . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19 chk.hy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21 chondro . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 22 collapse . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23 colSums . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24 Comparison . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25 count_lines . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27 cov,hyperSpec,missing-method . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28 decomposition . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 29 dimnames,hyperSpec-method . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 31 droplevels,hyperSpec-method . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 32 empty . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 33 flu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 33 Future-functions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 34 guess.wavelength . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 35 hy.getOptions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 35 hy.unittest . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37 hyperSpec-class . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37 initialize . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 38 labels ................
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