Mark Braiman Publications (as of April 2005):
Mark Braiman Publications (as of July 2019):
Original Research Articles in Refereed Journals:
1. A. T. Banyikwa, A. Goos, D. J. Kiemle, M. A. C. Foulkes, and M. S. Braiman, M.S. Experimental and computational modeling of H-bonded arginine-tyrosine groupings in aprotic environments . ACS Omega 2, 5641–5659 (2017). DOI:10.1021/acsomega.7b00282
2. A. Banyikwa, S. E. Miller, T. Gao, R. A. Krebs, Y. Xiao, C. Carney, and M. S. Braiman. Anhydrous monoalkyl guanidines in aprotic and nonpolar solvents: models for deprotonated arginine side chains in membrane environments. ACS Omega 2, 7239-7252 (2017) . DOI: 10.1021/acsomega.7b00281
3. K.Xu,T. M. Korter, and M. S. Braiman. Computations on the primary photoreaction of Br2 with CO2: Stepwise vs concerted addition of Br atoms. J. Phys. Chem. A 119, 3348-3354 (2015). DOI: 10.1021/jp5118882
4. M. S. Braiman, W. Sailer-Kronlachner, and C. J. Varjas. Bromine-sensitized Solar Photolysis of CO2. J. Phys. Chem. B, 116. 10430-10436 (2012). DOI: 10.1021/jp208985y
5. R.W. Hendler, C. W. Meuse, M. S. Braiman, P. D. Smith, and J. W. Kakareka. Infrared and Visible Absolute and Difference Spectra of Bacteriorhodopsin Photocycle Intermediates”. Appl. Spectrosc. 65, 1029-1045 (2011).
6. P. Gourdon, A. Alfredsson, A. Pedersen, E. Malmerberg, M. Nyblom, M. Widell, R. Berntsson, J. Pinhassi, M. Braiman, O. Hansson, N. Bonander G. Karlsson, and Neutze R. "Optimized in vitro and in vivo expression of proteorhodopsin: a seven-transmembrane proton pump." Protein Expr Purif. 58, 103-113 (2008). doi:10.1016/j.pep.2007.10.017
7. Y. Xiao, R. Partha, R. Krebs, and M. Braiman. "Time-resolved FTIR spectroscopy of the photointermediates involved in fast transient H+ release by proteorhodopsin." J Phys Chem B. 109, 634-641 (2005). DOI: 10.1021/jp046314g
8. Y. Xiao and M. S. Braiman. Modeling amino acid side chains in proteins: 15N NMR spectra of guanidino groups in nonpolar environments. J. Phys. Chem. B, 109:16953-16958. (2005). DOI: 10.1021/jp051279e
9. R. Partha, R. Krebs, T. L. Caterino, and M. S. Braiman. Weakened coupling of conserved arginine to the proteorhodopsin chromophore and its counterion implies structural differences from bacteriorhodopsin. BBA Bioenergetics 1708, 6-12. (2005). DOI: 10.1016/j.bbabio.2004.12.009
10. Y. Xiao, M. S. Hutson, M. Belenky, J. Herzfeld, and M. S. Braiman. Role of Arginine-82 in Fast Proton Release during the Bacteriorhodopsin Photocycle: A Time-Resolved FT-IR Study of Purple Membranes Containing 15N-Labeled Arginine. Biochemistry 43: 12809-12818 (2004). DOI: 10.1021/bi049238g
11. Vongsvivut, J.; Fernandez, J.; Ekgasit, S.; Braiman, M. S. Characterization of supported cylinder-planar germanium waveguide sensors with synchrotron infrared radiation. Appl. Spectrosc., 58: 143-151 (2004).
12. R. A. Krebs, D. Dunmire, R. Partha, and M. S. Braiman. Resonance Raman Characterization of Proteorhodopsin's Chromophore Environment. J. Phys. Chem. B, 107: 7877-7883 (2003).
13. J. Vongsvivut, S. V. Shilov, S. Ekgasit, and M.S. Braiman. Symmetrically-Tapered ................
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