Stanford University



ITI PUBLICATIONS – APRIL 20201. HYPERLINK "" Genotyping Array Design and Data Quality Control in the Million Veteran Program.Hunter-Zinck H, Shi Y, Li M, Gorman BR, Ji SG, Sun N, Webster T, Liem A, Hsieh P, Devineni P, Karnam P, Gong X, Radhakrishnan L, Schmidt J, Assimes TL, Huang J, Pan C, Humphries D, Brophy M, Moser J, Muralidhar S, Huang GD, Przygodzki R, Concato J, Gaziano JM, Gelernter J, O'Donnell CJ, Hauser ER, Zhao H, O'Leary TJ; VA Million Veteran Program, Tsao PS, Pyarajan S.Am J Hum Genet. 2020 Apr 2;106(4):535-548. doi: 10.1016/j.ajhg.2020.03.004.PMID:322438202. HYPERLINK "" KTE-X19 CAR T-Cell Therapy in Relapsed or Refractory Mantle-Cell Lymphoma.Wang M, Munoz J, Goy A, Locke FL, Jacobson CA, Hill BT, Timmerman JM, Holmes H, Jaglowski S, Flinn IW, McSweeney PA, Miklos DB, Pagel JM, Kersten MJ, Milpied N, Fung H, Topp MS, Houot R, Beitinjaneh A, Peng W, Zheng L, Rossi JM, Jain RK, Rao AV, Reagan PM.N Engl J Med. 2020 Apr 2;382(14):1331-1342. doi: 10.1056/NEJMoa1914347.PMID:322423583. HYPERLINK "" Center-level Variation in HLA-incompatible Living Donor Kidney Transplantation Outcomes.Jackson KR, Long J, Motter J, Bowring MG, Chen J, Waldram MM, Orandi BJ, Montgomery RA, Stegall MD, Jordan SC, Benedetti E, Dunn TB, Ratner LE, Kapur S, Pelletier RP, Roberts JP, Melcher ML, Singh P, Sudan DL, Posner MP, El-Amm JM, Shapiro R, Cooper M, Verbesey JE, Lipkowitz GS, Rees MA, Marsh CL, Sankari BR, Gerber DA, Wellen J, Bozorgzadeh A, Gaber AO, Heher E, Weng FL, Djamali A, Helderman JH, Concepcion BP, Brayman KL, Oberholzer J, Kozlowski T, Covarrubias K, Desai N, Massie AB, Segev DL, Garonzik-Wang J.Transplantation. 2020 Mar 30. doi: 10.1097/TP.0000000000003254. [Epub ahead of print]PMID:322352554. HYPERLINK "" Authors' Response.Natarajan G, Sriidhar A, Nolen T, Gantz M, Das A, Bell E, Hintz S, Bliss J, Greenberg R, Shankaran S.Pediatrics. 2020 Mar 31. pii: e20200056B. doi: 10.1542/peds.2020-0056B. [Epub ahead of print] No abstract available. PMID:322347985. HYPERLINK "" Brain Endothelial Cells Are Exquisite Sensors of Age-Related Circulatory Cues.Chen MB, Yang AC, Yousef H, Lee D, Chen W, Schaum N, Lehallier B, Quake SR, Wyss-Coray T.Cell Rep. 2020 Mar 31;30(13):4418-4432.e4. doi: 10.1016/j.celrep.2020.03.012.PMID:322344776. HYPERLINK "" Single-cell RNA sequencing in cardiovascular development, disease and medicine.Paik DT, Cho S, Tian L, Chang HY, Wu JC.Nat Rev Cardiol. 2020 Mar 30. doi: 10.1038/s41569-020-0359-y. [Epub ahead of print] Review.PMID:322313317. HYPERLINK "" Psoriatic arthritis in childhood: A commentary on the controversy.Stoll ML, Mellins ED.Clin Immunol. 2020 Mar 27;214:108396. doi: 10.1016/j.clim.2020.108396. [Epub ahead of print] Review.PMID:322292918. HYPERLINK "" Functional comparison of PBMCs isolated by Cell Preparation Tubes (CPT) vs. Lymphoprep Tubes.Chen H, Schürch CM, Noble K, Kim K, Krutzik PO, O'Donnell E, Vander Tuig J, Nolan GP, McIlwain DR.BMC Immunol. 2020 Mar 30;21(1):15. doi: 10.1186/s12865-020-00345-0.PMID:322284589. HYPERLINK "" Cryopreserved human skin allografts promote angiogenesis and dermal regeneration in a murine model.Henn D, Chen K, Maan ZN, Greco AH, Moortgat Illouz SE, Bonham CA, Barrera JA, Trotsyuk AA, Padmanabhan J, Momeni A, Wan DC, Nguyen D, Januszyk M, Gurtner GC.Int Wound J. 2020 Mar 30. doi: 10.1111/iwj.13349. [Epub ahead of print]PMID:3222745910. HYPERLINK "" Treating Alcohol Use Disorder in Chronic Liver Disease.Yoo ER, Cholankeril G, Ahmed A.Clin Liver Dis (Hoboken). 2020 Mar 26;15(2):77-80. doi: 10.1002/cld.881. eCollection 2020 Feb. Review.PMID:3222662111. HYPERLINK "" Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.Hu Y, Graff M, Haessler J, Buyske S, Bien SA, Tao R, Highland HM, Nishimura KK, Zubair N, Lu Y, Verbanck M, Hilliard AT, Klarin D, Damrauer SM, Ho YL; VA Million Veteran Program, Wilson PWF, Chang KM, Tsao PS, Cho K, O'Donnell CJ, Assimes TL, Petty LE, Below JE, Dikilitas O, Schaid DJ, Kosel ML, Kullo IJ, Rasmussen-Torvik LJ, Jarvik GP, Feng Q, Wei WQ, Larson EB, Mentch FD, Almoguera B, Sleiman PM, Raffield LM, Correa A, Martin LW, Daviglus M, Matise TC, Ambite JL, Carlson CS, Do R, Loos RJF, Wilkens LR, Le Marchand L, Haiman C, Stram DO, Hindorff LA, North KE, Kooperberg C, Cheng I, Peters U.PLoS Genet. 2020 Mar 30;16(3):e1008684. doi: 10.1371/journal.pgen.1008684. [Epub ahead of print]PMID:3222601612. HYPERLINK "" PNPLA3 Gene Polymorphism and Overall and Cardiovascular Mortality in the United States.Wijarnpreecha K, Scribani M, Raymond P, Harnois DM, Keaveny AP, Ahmed A, Kim D.J Gastroenterol Hepatol. 2020 Mar 27. doi: 10.1111/jgh.15045. [Epub ahead of print]PMID:3222008513. HYPERLINK "" Transcription polymerase-catalyzed emergence of novel RNA replicons.Jain N, Blauch LR, Szymanski MR, Das R, Tang SKY, Yin YW, Fire AZ.Science. 2020 Mar 26. pii: eaay0688. doi: 10.1126/science.aay0688. [Epub ahead of print]PMID:3221775014. HYPERLINK "" The evolutionary dynamics and fitness landscape of clonal hematopoiesis.Watson CJ, Papula AL, Poon GYP, Wong WH, Young AL, Druley TE, Fisher DS, Blundell JR.Science. 2020 Mar 27;367(6485):1449-1454. doi: 10.1126/science.aay9333.PMID:3221772115. HYPERLINK "" Comparative clinical efficacy and safety of the proposed biosimilar ABP 710 with infliximab reference product in patients with rheumatoid arthritis.Genovese MC, Sanchez-Burson J, Oh M, Balazs E, Neal J, Everding A, Hala T, Wojciechowski R, Fanjiang G, Cohen S.Arthritis Res Ther. 2020 Mar 26;22(1):60. doi: 10.1186/s13075-020-2142-1.PMID:3221682916. HYPERLINK "" Genomic variations in EBNA3C of EBV associate with posttransplant lymphoproliferative disorder.Maloney EM, Busque VA, Hui ST, Toh J, Fernandez-Vina M, Krams SM, Esquivel CO, Martinez OM.JCI Insight. 2020 Mar 26;5(6). pii: 131644. doi: 10.1172/jci.insight.131644.PMID:3221370517. HYPERLINK "" Dimorphism in the TCRγ-chain repertoire defines 2 types of human immunity to Epstein-Barr virus.Djaoud Z, Parham P.Blood Adv. 2020 Apr 14;4(7):1198-1205. doi: 10.1182/bloodadvances.2019001179.PMID:3221188118. HYPERLINK "" Neutrophils Recirculate through Lymph Nodes to Survey Tissues for Pathogens.Bogoslowski A, Wijeyesinghe S, Lee WY, Chen CS, Alanani S, Jenne C, Steeber DA, Scheiermann C, Butcher EC, Masopust D, Kubes P.J Immunol. 2020 Mar 23. pii: ji2000022. doi: 10.4049/jimmunol.2000022. [Epub ahead of print]PMID:3220542519. HYPERLINK "" Author Correction: Systemic factors as mediators of brain homeostasis, ageing and neurodegeneration.Pluvinage JV, Wyss-Coray T.Nat Rev Neurosci. 2020 Mar 13. doi: 10.1038/s41583-020-0293-3. [Epub ahead of print]PMID:3220330020. HYPERLINK "" Identification of anisomycin, prodigiosin and obatoclax as compounds with broad-spectrum anti-parasitic activity.Ehrenkaufer G, Li P, Stebbins EE, Kangussu-Marcolino MM, Debnath A, White CV, Moser MS, DeRisi J, Gisselberg J, Yeh E, Wang SC, Company AH, Monti L, Caffrey CR, Huston CD, Wang B, Singh U.PLoS Negl Trop Dis. 2020 Mar 20;14(3):e0008150. doi: 10.1371/journal.pntd.0008150. eCollection 2020 Mar.PMID:3219650021. HYPERLINK "" The Local and Peripheral Immune Responses to Stroke: Implications for Therapeutic Development.Zera KA, Buckwalter MS.Neurotherapeutics. 2020 Mar 19. doi: 10.1007/s13311-020-00844-3. [Epub ahead of print] Review.PMID:3219384022. HYPERLINK "" The Pseudomonas aeruginosa product pyochelin interferes with Trypanosoma cruzi infection and multiplication in vitro.Sass G, Miller Conrad LC, Nguyen TH, Stevens DA.Trans R Soc Trop Med Hyg. 2020 Mar 20. pii: trz136. doi: 10.1093/trstmh/trz136. [Epub ahead of print]PMID:3219354023. HYPERLINK "" Identification of elders at higher risk for fall with statewide electronic health records and a machine learning algorithm.Ye C, Li J, Hao S, Liu M, Jin H, Zheng L, Xia M, Jin B, Zhu C, Alfreds ST, Stearns F, Kanov L, Sylvester KG, Widen E, McElhinney D, Ling XB.Int J Med Inform. 2020 May;137:104105. doi: 10.1016/j.ijmedinf.2020.104105. Epub 2020 Mar 3.PMID:3219308924. HYPERLINK "" Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight.Fragiadakis GK, Wastyk HC, Robinson JL, Sonnenburg ED, Sonnenburg JL, Gardner CD.Am J Clin Nutr. 2020 Mar 18. pii: nqaa046. doi: 10.1093/ajcn/nqaa046. [Epub ahead of print]PMID:3218632625. HYPERLINK "" Outcomes of older patients in ZUMA-1, a pivotal study of axicabtagene ciloleucel in refractory large B-cell lymphoma.Neelapu SS, Jacobson CA, Oluwole OO, Munoz J, Deol A, Miklos D, Bartlett NL, Braunschweig I, Jiang Y, Kim JJ, Zheng L, Rossi JM, Locke FL.Blood. 2020 Mar 16. pii: blood.2019004162. doi: 10.1182/blood.2019004162. [Epub ahead of print] No abstract available. PMID:3218180126. HYPERLINK "" Pilot study measuring transepidermal water loss (TEWL) in children suggests trilipid cream is more effective than a paraffin-based emollient.Sindher S, Alkotob SS, Shojinaga MN, Brough HA, Bahnson T, S C, Lack G, Leung DYM, Nadeau KC.Allergy. 2020 Mar 16. doi: 10.1111/all.14275. [Epub ahead of print] No abstract available. PMID:3217632027. HYPERLINK "" Cumulative Lifetime Burden of Cardiovascular Disease From Early Exposure to Air Pollution.Kim JB, Prunicki M, Haddad F, Dant C, Sampath V, Patel R, Smith E, Akdis C, Balmes J, Snyder MP, Wu JC, Nadeau KC.J Am Heart Assoc. 2020 Mar 17;9(6):e014944. doi: 10.1161/JAHA.119.014944. Epub 2020 Mar 15.PMID:3217424928. HYPERLINK "" Successful liver transplantation in mitochondrial neurogastrointestinal encephalomyopathy (MNGIE).Kripps K, Nakayuenyongsuk W, Shayota BJ, Berquist W, Gomez-Ospina N, Esquivel CO, Concepcion W, Sampson JB, Cristin DJ, Jackson WE, Gilliland S, Pomfret EA, Kueht ML, Pettit RW, Sherif YA, Emrick LT, Elsea SH, Himes R, Hirano M, Van Hove JLK, Scaglia F, Enns GM, Larson AA.Mol Genet Metab. 2020 Mar 6. pii: S1096-7192(20)30060-3. doi: 10.1016/j.ymgme.2020.03.001. [Epub ahead of print]PMID:3217324029. HYPERLINK "" Editorial overview: The fortunate students, a tribute to the fortunate professor.Monack DM, Brodsky IE.Curr Opin Microbiol. 2020 Mar 11. pii: S1369-5274(20)30022-9. doi: 10.1016/j.mib.2020.02.001. [Epub ahead of print] No abstract available. PMID:3217168930. HYPERLINK "" The road to rheumatoid arthritis prevention: challenges and opportunities.Chaichian Y, Genovese MC, Weisman MH.Clin Rheumatol. 2020 Mar 13. doi: 10.1007/s10067-020-05016-4. [Epub ahead of print]PMID:3217048631. HYPERLINK "" Gut microbiota and cardiovascular disease: opportunities and challenges.Kazemian N, Mahmoudi M, Halperin F, Wu JC, Pakpour S.Microbiome. 2020 Mar 14;8(1):36. doi: 10.1186/s40168-020-00821-0. Review.PMID:3216910533. HYPERLINK "" Stem Cell-Derived Cardiomyocytes and Beta-Adrenergic Receptor Blockade in Duchenne Muscular Dystrophy?Cardiomyopathy.Kamdar F, Das S, Gong W, Klaassen Kamdar A, Meyers TA, Shah P, Ervasti JM, Townsend D, Kamp TJ, Wu JC, Garry MG, Zhang J, Garry DJ.J Am Coll Cardiol. 2020 Mar 17;75(10):1159-1174. doi: 10.1016/j.jacc.2019.12.066.PMID:3216489034. HYPERLINK "" Pharmacological Silencing of MicroRNA-152 Prevents Pressure Overload-Induced Heart Failure.LaRocca TJ, Seeger T, Prado M, Perea-Gil I, Neofytou E, Mecham BH, Ameen M, Chang ACY, Pandey G, Wu JC, Karakikes I.Circ Heart Fail. 2020 Mar;13(3):e006298. doi: 10.1161/CIRCHEARTFAILURE.119.006298. Epub 2020 Mar 12.PMID:3216077135. HYPERLINK "" Immune Profiling of Human Gut-Associated Lymphoid Tissue Identifies a Role for Isolated Lymphoid Follicles in Priming of Region-Specific Immunity.Fenton TM, J?rgensen PB, Niss K, Rubin SJS, M?rbe UM, Riis LB, Da Silva C, Plumb A, Vandamme J, Jakobsen HL, Brunak S, Habtezion A, Nielsen OH, Johansson-Lindbom B, Agace WW.Immunity. 2020 Mar 17;52(3):557-570.e6. doi: 10.1016/j.immuni.2020.02.001. Epub 2020 Mar 10.PMID:3216052336. HYPERLINK "" The role of ultrasound in enhancing mesenchymal stromal cell-based therapies.Liu DD, Ullah M, Concepcion W, Dahl JJ, Thakor AS.Stem Cells Transl Med. 2020 Mar 10. doi: 10.1002/sctm.19-0391. [Epub ahead of print] Review.PMID:3215780237. HYPERLINK "" Underrepresented Minorities in General Surgery Residency: Analysis of Interviewed Applicants, Residents, and Core Teaching Faculty.Jarman BT, Borgert AJ, Kallies KJ, Joshi AR, Smink DS, Sarosi GA, Chang L, Green JM, Greenberg JA, Melcher ML, Nfonsam V, Whiting J.J Am Coll Surg. 2020 Mar 7. pii: S1072-7515(20)30233-7. doi: 10.1016/j.jamcollsurg.2020.02.042. [Epub ahead of print]PMID:3215665438. HYPERLINK "" Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections.Secor PR, Burgener EB, Kinnersley M, Jennings LK, Roman-Cruz V, Popescu M, Van Belleghem JD, Haddock N, Copeland C, Michaels LA, de Vries CR, Chen Q, Pourtois J, Wheeler TJ, Milla CE, Bollyky PL.Front Immunol. 2020 Feb 21;11:244. doi: 10.3389/fimmu.2020.00244. eCollection 2020. Review.PMID:3215357539. HYPERLINK "" Systems Biological Analysis of Immune Response to Influenza Vaccination.Cortese M, Sherman AC, Rouphael NG, Pulendran B.Cold Spring Harb Perspect Med. 2020 Mar 9. pii: a038596. doi: 10.1101/cshperspect.a038596. [Epub ahead of print]PMID:3215224540. HYPERLINK "" A Delayed Inoculation Model of Chronic Pseudomonas aeruginosa Wound Infection.de Vries CR, Sweere JM, Ishak H, Sunkari V, Bach MS, Liu D, Manasherob R, Bollyky PL.J Vis Exp. 2020 Feb 20;(156). doi: 10.3791/60599.PMID:3215016141. HYPERLINK "" Contralateral Vasospasm in an Uncomplicated Elective Anterior Communicating Artery Aneurysm Clipping.Knight JA 2nd, Bigder MG, Brigido MM, Li Y, Steinberg GK.World Neurosurg. 2020 Mar 4. pii: S1878-8750(20)30411-3. doi: 10.1016/j.wneu.2020.02.136. [Epub ahead of print]PMID:3214542242. HYPERLINK "" First-in-Human Study of Utomilumab, a 4-1BB/CD137 Agonist, in Combination with Rituximab in Patients with Follicular and Other CD20+ Non-Hodgkin Lymphomas.Gopal AK, Levy R, Houot R, Patel SP, Popplewell L, Jacobson C, Mu XJ, Deng S, Ching KA, Chen Y, Davis CB, Huang B, Fly KD, Thall A, Woolfson A, Bartlett NL.Clin Cancer Res. 2020 Mar 6. pii: clincanres.2973.2019. doi: 10.1158/1078-R-19-2973. [Epub ahead of print]PMID:3214413443. HYPERLINK "" Reversal of Hyperglycemia and Suppression of Type 1 Diabetes in the NOD Mouse with Apoptotic DNA Immunotherapy? (ADi?), ADi-100.Alleva DG, Rezaee M, Yip L, Ren G, Rosenberg J, Concepcion W, Escher A, Shabahang S, Thakor AS.Biomedicines. 2020 Mar 4;8(3). pii: E53. doi: 10.3390/biomedicines8030053.PMID:3214331644. HYPERLINK "" Screening for Cognitive Impairment in Older Adults: US Preventive Services Task Force Recommendation Statement.US Preventive Services Task Force, Owens DK, Davidson KW, Krist AH, Barry MJ, Cabana M, Caughey AB, Doubeni CA, Epling JW Jr, Kubik M, Landefeld CS, Mangione CM, Pbert L, Silverstein M, Simon MA, Tseng CW, Wong JB.JAMA. 2020 Feb 25;323(8):757-763. doi: 10.1001/jama.2020.0435.PMID:3209685845. HYPERLINK "" Structure of the neurotensin receptor 1 in complex with β-arrestin 1.Huang W, Masureel M, Qu Q, Janetzko J, Inoue A, Kato HE, Robertson MJ, Nguyen KC, Glenn JS, Skiniotis G, Kobilka BK.Nature. 2020 Mar;579(7798):303-308. doi: 10.1038/s41586-020-1953-1. Epub 2020 Jan 16.PMID:3194577146. HYPERLINK "" A short translational ramp determines the efficiency of protein synthesis.Verma M, Choi J, Cottrell KA, Lavagnino Z, Thomas EN, Pavlovic-Djuranovic S, Szczesny P, Piston DW, Zaher HS, Puglisi JD, Djuranovic S.Nat Commun. 2019 Dec 18;10(1):5774. doi: 10.1038/s41467-019-13810-1.PMID:3185290347. HYPERLINK "" Identification of Plasmodium?dipeptidyl aminopeptidase allosteric inhibitors by high throughput screening.Sanchez MI, de Vries LE, Lehmann C, Lee JT, Ang KK, Wilson C, Chen S, Arkin MR, Bogyo M, Deu E.PLoS One. 2019 Dec 18;14(12):e0226270. doi: 10.1371/journal.pone.0226270. eCollection 2019.PMID:3185169948. HYPERLINK "" Depletion of microbiome-derived molecules in the host using Clostridium genetics.Guo CJ, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH, Fischbach MA.Science. 2019 Dec 13;366(6471). pii: eaav1282. doi: 10.1126/science.aav1282.PMID:3183163949. HYPERLINK "" Continuous and Discrete Neuron Types of the Adult Murine Striatum.Stanley G, Gokce O, Malenka RC, Südhof TC, Quake SR.Neuron. 2020 Feb 19;105(4):688-699.e8. doi: 10.1016/j.neuron.2019.11.004. Epub 2019 Dec 5.PMID:3181365150. HYPERLINK "" c-Jun overexpression in CAR T cells induces exhaustion resistance.Lynn RC, Weber EW, Sotillo E, Gennert D, Xu P, Good Z, Anbunathan H, Lattin J, Jones R, Tieu V, Nagaraja S, Granja J, de Bourcy CFA, Majzner R, Satpathy AT, Quake SR, Monje M, Chang HY, Mackall CL.Nature. 2019 Dec;576(7786):293-300. doi: 10.1038/s41586-019-1805-z. Epub 2019 Dec 4.PMID:3180200451. HYPERLINK "" Nucleic acid cleavage with a hyperthermophilic Cas9 from an uncultured Ignavibacterium.Schmidt ST, Yu FB, Blainey PC, May AP, Quake SR.Proc Natl Acad Sci U S A. 2019 Nov 12;116(46):23100-23105. doi: 10.1073/pnas.1904273116. Epub 2019 Oct 28.PMID:3165904852. HYPERLINK "" Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei.Ren J, Isakova A, Friedmann D, Zeng J, Grutzner SM, Pun A, Zhao GQ, Kolluru SS, Wang R, Lin R, Li P, Li A, Raymond JL, Luo Q, Luo M, Quake SR, Luo L.Elife. 2019 Oct 24;8. pii: e49424. doi: 10.7554/eLife.49424.PMID:3164740953. HYPERLINK "" A proteomic clock for malignant gliomas: The role of the environment in tumorigenesis at the presymptomatic stage.Zheng L, Zhang Y, Hao S, Chen L, Sun Z, Yan C, Whitin JC, Jang T, Merchant M, McElhinney DB, Sylvester KG, Cohen HJ, Recht L, Yao X, Ling XB.PLoS One. 2019 Oct 10;14(10):e0223558. doi: 10.1371/journal.pone.0223558. eCollection 2019.PMID:3160028854. HYPERLINK "" House dust mites activate nociceptor-mast cell clusters to drive type 2 skin inflammation.Serhan N, Basso L, Sibilano R, Petitfils C, Meixiong J, Bonnart C, Reber LL, Marichal T, Starkl P, Cenac N, Dong X, Tsai M, Galli SJ, Gaudenzio N.Nat Immunol. 2019 Nov;20(11):1435-1443. doi: 10.1038/s41590-019-0493-z. Epub 2019 Oct 7.PMID:3159156955. HYPERLINK "" Vismione B Interferes with Trypanosoma cruzi Infection of Vero Cells and Human Stem Cell-Derived Cardiomyocytes.Sass G, Tsamo AT, Chounda GAM, Nangmo PK, Sayed N, Bozzi A, Wu JC, Nkengfack AE, Stevens DA.Am J Trop Med Hyg. 2019 Dec;101(6):1359-1368. doi: 10.4269/ajtmh.19-0350.PMID:3157156856. HYPERLINK "" Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.Fang H, Hui Q, Lynch J, Honerlaw J, Assimes TL, Huang J, Vujkovic M, Damrauer SM, Pyarajan S, Gaziano JM, DuVall SL, O'Donnell CJ, Cho K, Chang KM, Wilson PWF, Tsao PS; VA Million Veteran Program, Sun YV, Tang H.Am J Hum Genet. 2019 Oct 3;105(4):763-772. doi: 10.1016/j.ajhg.2019.08.012. Epub 2019 Sep 26.PMID:3156443957. HYPERLINK "" Mast cells are critical for controlling the bacterial burden and the healing of infected wounds.Zimmermann C, Troeltzsch D, Giménez-Rivera VA, Galli SJ, Metz M, Maurer M, Siebenhaar F.Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20500-20504. doi: 10.1073/pnas.1908816116. Epub 2019 Sep 23.PMID:3154843058. HYPERLINK "" eIF5B gates the transition from translation initiation to elongation.Wang J, Johnson AG, Lapointe CP, Choi J, Prabhakar A, Chen DH, Petrov AN, Puglisi JD.Nature. 2019 Sep;573(7775):605-608. doi: 10.1038/s41586-019-1561-0. Epub 2019 Sep 18.PMID:3153422059. HYPERLINK "" Safety and immunogenicity of investigational seasonal influenza hemagglutinin DNA vaccine followed by trivalent inactivated vaccine administered intradermally or intramuscularly in healthy adults: An open-label randomized phase 1 clinical trial.Carter C, Houser KV, Yamshchikov GV, Bellamy AR, May J, Enama ME, Sarwar U, Larkin B, Bailer RT, Koup R, Chen GL, Patel SM, Winokur P, Belshe R, Dekker CL, Graham BS, Ledgerwood JE; VRC 703 study team.PLoS One. 2019 Sep 18;14(9):e0222178. doi: 10.1371/journal.pone.0222178. eCollection 2019.PMID:3153278960. HYPERLINK "" Self-assembling manifolds in single-cell RNA sequencing data.Tarashansky AJ, Xue Y, Li P, Quake SR, Wang B.Elife. 2019 Sep 16;8. pii: e48994. doi: 10.7554/eLife.48994.PMID:3152459661. HYPERLINK "" Factors associated with general surgery residents' decisions regarding fellowship and subspecialty stratified by burnout and quality of life.McClintock NC, Gray KE, Neville AL, Kaji AH, Wolfe MM, Calhoun KE, Amersi FF, Donahue TR, Arnell TD, Jarman BT, Inaba K, Melcher ML, Morris JB, Smith BR, Reeves ME, Gauvin JM, Salcedo ES, Sidwell RA, Dent DL, Murayama KM, Damewood RB, Poola VP, de Virgilio CM.Am J Surg. 2019 Dec;218(6):1090-1095. doi: 10.1016/j.amjsurg.2019.08.003. Epub 2019 Aug 8.PMID:3142189662. HYPERLINK "" Viral taxonomy derived from evolutionary genome relationships.Dougan TJ, Quake SR.PLoS One. 2019 Aug 14;14(8):e0220440. doi: 10.1371/journal.pone.0220440. eCollection 2019.PMID:3141205163. HYPERLINK "" Opposing T cell responses in experimental autoimmune encephalomyelitis.Saligrama N, Zhao F, Sikora MJ, Serratelli WS, Fernandes RA, Louis DM, Yao W, Ji X, Idoyaga J, Mahajan VB, Steinmetz LM, Chien YH, Hauser SL, Oksenberg JR, Garcia KC, Davis MM.Nature. 2019 Aug;572(7770):481-487. doi: 10.1038/s41586-019-1467-x. Epub 2019 Aug 7.PMID:3139158564. HYPERLINK "" Update From the Advisory Committee on Immunization Practices.O'Leary ST, Maldonado YA, Kimberlin DW.J Pediatric Infect Dis Soc. 2019 Nov 6;8(5):379-383. doi: 10.1093/jpids/piz045.PMID:3136773865. HYPERLINK "" Animal Models for the Translational Investigation of Lymphedema.Rockson SG.Lymphat Res Biol. 2019 Aug;17(4):401. doi: 10.1089/lrb.2019.29069.sr. Epub 2019 Jul 30. No abstract available. PMID:3136158466. HYPERLINK "" The future of omics for clinical practice.Long A, Bunning B, Borro M, Sampath V, Nadeau KC.Ann Allergy Asthma Immunol. 2019 Dec;123(6):535-536. doi: 10.1016/j.anai.2019.07.016. Epub 2019 Jul 26. No abstract available. PMID:3135197868. HYPERLINK "" Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility.Stowers RS, Shcherbina A, Israeli J, Gruber JJ, Chang J, Nam S, Rabiee A, Teruel MN, Snyder MP, Kundaje A, Chaudhuri O.Nat Biomed Eng. 2019 Dec;3(12):1009-1019. doi: 10.1038/s41551-019-0420-5. Epub 2019 Jul 8.PMID:3128558169. HYPERLINK "" Epigenetic signature of PD-1+ TCF1+ CD8 T cells that act as resource cells during chronic viral infection and respond to PD-1 blockade.Jadhav RR, Im SJ, Hu B, Hashimoto M, Li P, Lin JX, Leonard WJ, Greenleaf WJ, Ahmed R, Goronzy JJ.Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14113-14118. doi: 10.1073/pnas.1903520116. Epub 2019 Jun 21.PMID:3122760670. HYPERLINK "" A natural killer cell receptor takes sharp aim at the world of bacteria.Parham P.Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12601-12603. doi: 10.1073/pnas.1907937116. Epub 2019 Jun 7. No abstract available. PMID:3117515071. HYPERLINK "" Modeling Cardiovascular Risks of E-Cigarettes With Human-Induced Pluripotent Stem Cell-Derived Endothelial Cells.Lee WH, Ong SG, Zhou Y, Tian L, Bae HR, Baker N, Whitlatch A, Mohammadi L, Guo H, Nadeau KC, Springer ML, Schick SF, Bhatnagar A, Wu JC.J Am Coll Cardiol. 2019 Jun 4;73(21):2722-2737. doi: 10.1016/j.jacc.2019.03.476.PMID:3114681872. HYPERLINK "" Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection.Davis CW, Jackson KJL, McElroy AK, Halfmann P, Huang J, Chennareddy C, Piper AE, Leung Y, Albari?o CG, Crozier I, Ellebedy AH, Sidney J, Sette A, Yu T, Nielsen SCA, Goff AJ, Spiropoulou CF, Saphire EO, Cavet G, Kawaoka Y, Mehta AK, Glass PJ, Boyd SD, Ahmed R.Cell. 2019 May 30;177(6):1566-1582.e17. doi: 10.1016/j.cell.2019.04.036. Epub 2019 May 16.PMID:3110484073. HYPERLINK "" Proteasome-Dependent Regulation of Distinct Metabolic States During Long-Term Culture of Human iPSC-Derived Cardiomyocytes.Ebert A, Joshi AU, Andorf S, Dai Y, Sampathkumar S, Chen H, Li Y, Garg P, Toischer K, Hasenfuss G, Mochly-Rosen D, Wu JC.Circ Res. 2019 Jun 21;125(1):90-103. doi: 10.1161/CIRCRESAHA.118.313973. Epub 2019 May 20.PMID:3110456774. HYPERLINK "" Role for polo-like kinase 4 in mediation of cytokinesis.Press MF, Xie B, Davenport S, Zhou Y, Guzman R, Nolan GP, O'Brien N, Palazzolo M, Mak TW, Brugge JS, Slamon DJ.Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11309-11318. doi: 10.1073/pnas.1818820116. Epub 2019 May 16.PMID:3109759775. HYPERLINK "" Trends in overall, cardiovascular and cancer-related mortality among individuals with diabetes reported on death certificates in the United States between 2007 and 2017.Kim D, Li AA, Cholankeril G, Kim SH, Ingelsson E, Knowles JW, Harrington RA, Ahmed A.Diabetologia. 2019 Jul;62(7):1185-1194. doi: 10.1007/s00125-019-4870-9. Epub 2019 Apr 22.PMID:3101177676. HYPERLINK "" Select sequencing of clonally expanded CD8+ T cells reveals limits to clonal expansion.Huang H, Sikora MJ, Islam S, Chowdhury RR, Chien YH, Scriba TJ, Davis MM, Steinmetz LM.Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):8995-9001. doi: 10.1073/pnas.1902649116. Epub 2019 Apr 16.PMID:3099237777. HYPERLINK "" DNA threads released by activated CD4+ T lymphocytes provide autocrine costimulation.Costanza M, Poliani PL, Portararo P, Cappetti B, Musio S, Pagani F, Steinman L, Colombo MP, Pedotti R, Sangaletti S.Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):8985-8994. doi: 10.1073/pnas.1822013116. Epub 2019 Apr 15.PMID:3098819478. HYPERLINK "" AIRE expression controls the peripheral selection of autoreactive B cells.Sng J, Ayoglu B, Chen JW, Schickel JN, Ferre EMN, Glauzy S, Romberg N, Hoenig M, Cunningham-Rundles C, Utz PJ, Lionakis MS, Meffre E.Sci Immunol. 2019 Apr 12;4(34). pii: eaav6778. doi: 10.1126/sciimmunol.aav6778.PMID:3097979779. HYPERLINK "" Immune tolerance in multiple sclerosis and neuromyelitis optica with peptide-loaded tolerogenic dendritic cells in a phase 1b trial.Zubizarreta I, Flórez-Grau G, Vila G, Cabezón R, Espa?a C, Andorra M, Saiz A, Llufriu S, Sepulveda M, Sola-Valls N, Martinez-Lapiscina EH, Pulido-Valdeolivas I, Casanova B, Martinez Gines M, Tellez N, Oreja-Guevara C, Espa?ol M, Trias E, Cid J, Juan M, Lozano M, Blanco Y, Steinman L, Benitez-Ribas D, Villoslada P.Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8463-8470. doi: 10.1073/pnas.1820039116. Epub 2019 Apr 8.PMID:3096237480. HYPERLINK "" Clinical Pharmacogenetics Implementation Consortium Guideline for Cytochrome P450 (CYP)2D6 Genotype and Atomoxetine Therapy.Brown JT, Bishop JR, Sangkuhl K, Nurmi EL, Mueller DJ, Dinh JC, Gaedigk A, Klein TE, Caudle KE, McCracken JT, de Leon J, Leeder JS.Clin Pharmacol Ther. 2019 Jul;106(1):94-102. doi: 10.1002/cpt.1409. Epub 2019 Apr 13. Review.PMID:3080167781. HYPERLINK "" Listeria monocytogenes cell-to-cell spread in epithelia is heterogeneous and dominated by rare pioneer bacteria.Ortega FE, Koslover EF, Theriot JA.Elife. 2019 Feb 5;8. pii: e40032. doi: 10.7554/eLife.40032.PMID:3071997182. HYPERLINK "" A 20-Gene Set Predictive of Progression to Severe Dengue.Robinson M, Sweeney TE, Barouch-Bentov R, Sahoo MK, Kalesinskas L, Vallania F, Sanz AM, Ortiz-Lasso E, Albornoz LL, Rosso F, Montoya JG, Pinsky BA, Khatri P, Einav S.Cell Rep. 2019 Jan 29;26(5):1104-1111.e4. doi: 10.1016/j.celrep.2019.01.033.PMID:3069934283. HYPERLINK "" Report from the National Institute of Allergy and Infectious Diseases workshop on "Atopic dermatitis and the atopic march: Mechanisms and interventions".Davidson WF, Leung DYM, Beck LA, Berin CM, Boguniewicz M, Busse WW, Chatila TA, Geha RS, Gern JE, Guttman-Yassky E, Irvine AD, Kim BS, Kong HH, Lack G, Nadeau KC, Schwaninger J, Simpson A, Simpson EL, Spergel JM, Togias A, Wahn U, Wood RA, Woodfolk JA, Ziegler SF, Plaut M.J Allergy Clin Immunol. 2019 Mar;143(3):894-913. doi: 10.1016/j.jaci.2019.01.003. Epub 2019 Jan 9.PMID:3063934684. HYPERLINK "" Donor Killer Cell Immunoglobulin-Like Receptor Genotype Does Not Improve Graft-versus-Leukemia Responses in Chronic Lymphocytic Leukemia after Unrelated Donor Transplant: A Center for International Blood and Marrow Transplant Research Analysis.Bachanova V, Weisdorf DJ, Wang T, Marsh SGE, Cereb N, Haagenson MD, Spellman SR, Lee SJ, Guethlein LA, Parham P, Miller JS, Cooley SA.Biol Blood Marrow Transplant. 2019 May;25(5):949-954. doi: 10.1016/j.bbmt.2018.12.763. Epub 2018 Dec 27.PMID:3059454285.Non-Graft-versus-Host Disease Ocular Complications after Hematopoietic Cell Transplantation: Expert Review from the Late Effects and Quality of Life Working Committee of the Center for International Blood and Marrow Transplant Research and the Transplant Complications Working Party of the European Society for Blood and Marrow Transplantation.Inamoto Y, Petri?ek I, Burns L, Chhabra S, DeFilipp Z, Hematti P, Rovó A, Schears R, Shah A, Agrawal V, Ahmed A, Ahmed I, Ali A, Aljurf M, Alkhateeb H, Beitinjaneh A, Bhatt N, Buchbinder D, Byrne M, Callander N, Fahnehjelm K, Farhadfar N, Gale RP, Ganguly S, Hashmi S, Hildebrandt GC, Horn E, Jakubowski A, Kamble RT, Law J, Lee C, Nathan S, Penack O, Pingali R, Prasad P, Pulanic D, Rotz S, Shreenivas A, Steinberg A, Tabbara K, Tichelli A, Wirk B, Yared J, Basak GW, Battiwalla M, Duarte R, Savani BN, Flowers MED, Shaw BE, Valdés-Sanz N.Biol Blood Marrow Transplant. 2019 May;25(5):e145-e154. doi: 10.1016/j.bbmt.2018.11.033. Epub 2018 Dec 3. Review.PMID:3052197586. HYPERLINK "" Functional pathways regulated by microRNA networks in CD8 T-cell aging.Gustafson CE, Cavanagh MM, Jin J, Weyand CM, Goronzy JJ.Aging Cell. 2019 Feb;18(1):e12879. doi: 10.1111/acel.12879. Epub 2018 Nov 28.PMID:3048855987. HYPERLINK "" Role of Toxoplasma IgA as Part of a Reference Panel for the Diagnosis of Acute Toxoplasmosis during Pregnancy.Olariu TR, Blackburn BG, Press C, Talucod J, Remington JS, Montoya JG.J Clin Microbiol. 2019 Jan 30;57(2). pii: e01357-18. doi: 10.1128/JCM.01357-18. Print 2019 Feb.PMID:3046389988. HYPERLINK "" Association of Pretransplant Renal Function With Liver Graft and Patient Survival After Liver Transplantation in Patients With Nonalcoholic Steatohepatitis.Molnar MZ, Joglekar K, Jiang Y, Cholankeril G, Abdul MKM, Kedia S, Gonzalez HC, Ahmed A, Singal A, Bhamidimarri KR, Aithal GP, Duseja A, Wong VW, Gulnare A, Puri P, Nair S, Eason JD, Satapathy SK; Global NAFLD Consortium.Liver Transpl. 2019 Mar;25(3):399-410. doi: 10.1002/lt.25367.PMID:3036902389. HYPERLINK "" Circulating tumor DNA assessment in patients with diffuse large B-cell lymphoma following CAR T-cell therapy.Hossain NM, Dahiya S, Le R, Abramian AM, Kong KA, Muffly LS, Miklos DB.Leuk Lymphoma. 2019 Feb;60(2):503-506. doi: 10.1080/10428194.2018.1474463. Epub 2018 Jul 3. No abstract available. PMID:2996646190. HYPERLINK "" High Throughput Sequencing and Assessing Disease Risk.Rego SM, Snyder MP.Cold Spring Harb Perspect Med. 2019 Jan 2;9(1). pii: a026849. doi: 10.1101/cshperspect.a026849. Review.PMID:2995913191. HYPERLINK "" Rapid adaptation in large populations with very rare sex: Scalings and spontaneous oscillations.Pearce MT, Fisher DS.Theor Popul Biol. 2019 Oct;129:18-40. doi: 10.1016/j.tpb.2017.11.005. Epub 2017 Dec 12.PMID:29246459 ................
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