CSHL2002: All-Atom Contact Analysis for Model Diagnosis ...

Check-out the model vs all-atom contact dots and electron-density map. Above, you centered on the Cβ of threonine 32. If needed, use the menu command /Controls/Centre on atom to recenter. Also, turn off display of the map by the /Menus/Objects pulldown. It is very convenient to tear-off the /Menus/Objects, the /Menus/User menu, and the /Menus ... ................
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