Unix bootcamp Outline .uk
Unix bootcamp OutlineBasic Unix Concepts and TermsTypes of unix environmentLinux vs other UnixDifferent linux flavoursServers, Desktops, Virtual Machines, Cloud ServersShellsBasic shell usageStructure of a unix commandMan pagesShort and long options, combining optionsRedirecting and pipinggrep, sort, wcCreating combined commandsChecking exit statusCreating simple loops in bashEnvironment variablesSimple BASH scriptingInstalling softwareThe PATH variableGeneral layout of the unix filesystem/bin//usr/bin/opt//srv//usr/local/bin/Types of installationOperating system packagesBinary distributionsSource distributionsInstalling OS packagesAptYumInstalling binary packagesTar Unzip etc.Dynamic librariesLD_LIBRARY_PATHLddInstalling source packagesCompilers and make systemsDevelopment packagesConfigure optionsPrefixMake optionsParallelisationTroubleshooting and debuggingAdding packages to other languagesPythonPipAnaconda?Manual installationRInstall.packagesbiocLiteR CMD INSTALLMakevarsPerlCpanManual install (two systems)Automated installationsConda / minicondaDockerOther useful stuffSSH / SCP / keysNohup and detached processesBuilding virtual machinesUsing cloud infrastructure ................
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