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Jupyter Notebook

[web] portal.biohpc.swmed.edu [email] biohpc-help@utsouthwestern.edu

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2018-05-16

What is Jupyter Notebook?

Jupyter Notebook is an interactive web application that allows users to: ? Interactively develop code ? Create publication quality figures ? Produce documented workflows

and pipelines Use cases at UT Southwestern: ? Teaching courses ? Machine learning ? Statistical modeling

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Example Bioinformatics Workflow



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Jupyter Notebook ? Central Concepts

Code

Environment Kernels

Markdown

Magics

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So how does it work?

Jupyter Server on a

Nucleus node

HTTP &

Websockets

Web Browser

Notebook File

5 work.html

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