Using Jupyter at NERSC
Using Jupyter at NERSC
New User Training June 16, 2020
Rollin Thomas
Data and Analytics Services Group
1
What Is Jupyter?
Interactive open-source web application
Allows you to create and share documents, "notebooks," containing:
Live code Equations Visualizations Narrative text Interactive widgets
Things you can use Jupyter notebooks for:
Data cleaning and data transformation Numerical simulation Statistical modeling Data visualization Machine learning Workflows and analytics frameworks
2
Why Does NERSC Care About Jupyter Usage?
Data 8: Foundations of Data Science, Fall 2018, Zellerbach Hall
2017 ACM Software System Award:
"... a de facto standard for data analysis in research, education, journalism and industry. Jupyter has broad impact across domains and use cases. Today more than 2,000,000 Jupyter notebooks are on GitHub, each a distinct instance of a Jupyter application--covering a range of uses from technical documentation to course materials, books and academic publications."
LIGO Binary BH-BH Merger GW Signature Figure from LIGO EPO/Publication Jupyter Notebook
Integral part of Big (Data) Science & Superfacility:
LSST-DESC, DESI, ALS, LCLS, Materials Project, NCEM, LUX, LZ, KBase
Generational shift in data science:
UCB's Data 8 course, entirely in Jupyter "I'll send you a copy of my notebook" Training events adopting notebooks (DL)
Reproducibility and science outreach:
Open source code and open science Jupyter notebooks alongside publications
3
Jupyter at NERSC Timeline
Users running IPython via login nodes
Jupyter as a NERSC "science
gateway" app
Hopper
Edison
Access to Cori via 1 login node enabled
Cori
Transition to Docker-based
JupyterHub Deployment
JupyterLab Beta enabled at NERSC
NBViewer, more Cori login nodes, expand compute
access
2013
2014
2015
2016
2017
IPython becomes "Jupyter"
NERSC Talks, Papers, Posters, and/or Demos:
SC16 ? CUG17 ? JupyterCon17 IDEAS/ECP ? ISC18 JupyterCon18 ? ECP2019 BlueWaters Webinar ? Community Workshop ? NUG2019 NUG VC ? SciPy2020
First JupyterCon
4
2018
2019
2020
2021
Jupyter team receives ACM
Software Systems Award
Added 2 more login nodes, CPU and GPU compute jobs for Jupyter
Number of Jupyter Users per Month
5
: Bug in monitoring, data missing Aug, Sep 2019.
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